# Eureka! Control File for Stage 5: Lightcurve Fitting

ncpu			1		# The number of CPU threads to use when running emcee or dynesty in parallel

allapers		False	# Run S5 on all of the apertures considered in S4? Otherwise will use newest output in the inputdir
rescale_err		False	# Rescale uncertainties to have reduced chi-squared of unity
verbose			True	# If True, more details will be printed about steps

# NORMAL FITTING
fit_method		[exoplanet, nuts]
run_myfuncs		[starry, sinusoid_pc, polynomial, expramp, ypos, ywidth]
fit_par			./S5_WASP-43b_fitpar_starry_white.epf

# Manual clipping in time
manual_clip		[[None,779]]  # A list of lists specifying the start and end integration numbers for manual removal.

# Force positive phase variations
force_positivity	False

# Limb darkening controls
# IMPORTANT: limb-darkening coefficients are not automatically fixed then, change to 'fixed' in .epf file whether they should be fixed or fitted!
use_generate_ld	None  # use the generated limb-darkening coefficients from Stage 4? Options: exotic-ld, None. For exotic-ld, the limb-darkening laws available are linear, quadratic, 3-parameter and 4-parameter non-linear.
ld_file			None  # Fully qualified path to the location of a limb darkening file that you want to use
ld_file_white	None  # Fully qualified path to the location of a limb darkening file that you want to use for the white-light light curve (required if ld_file is not None and any EPF parameters are set to white_free or white_fixed).

# General fitter
old_fitparams	None  # filename relative to topdir that points to a fitparams csv to resume where you left off (set to None to start from scratch)

# PyMC3 NUTS sampler settings
tune			6000
draws			6000
chains			3
target_accept	0.95

# Plotting controls
interp			False			# Should astrophysical model be interpolated (useful for uneven sampling like that from HST)

# Diagnostics
isplots_S5		5				# Generate few (1), some (3), or many (5) figures (Options: 1 - 5)
nbin_plot		100				# The number of bins that should be used for figures 5104 and 5304. Defaults to 100.
testing_S5		False			# Boolean, set True to only use the first spectral channel
testing_model	False			# Boolean, set True to only inject a model source of systematics
hide_plots		True			# If True, plots will automatically be closed rather than popping up

# Project directory
topdir			/Volumes/DataDrive/WASP43b_Phasecurve

# Directories relative to project dir
inputdir		Stage4_white
outputdir		Stage5_white