# Eureka! Control File for Stage 4: Generate Lightcurves 

# Number of spectroscopic channels spread evenly over given wavelength range
nspecchan		1		# Number of spectroscopic channels
compute_white	False	# Also compute the white-light lightcurve 
wave_min		5.0		# Minimum wavelength
wave_max		10.5	# Maximum wavelength
allapers		False	# Run S4 on all of the apertures considered in S3? Otherwise will use newest output in the inputdir

# Parameters for drift correction of 1D spectra
recordDrift		True	# Set True to record drift/jitter in 1D spectra (always recorded if correctDrift is True)
correctDrift	False	# Set True to correct drift/jitter in 1D spectra (not recommended for simulated data)
drift_preclip	0		# Ignore first drift_preclip points of spectrum
drift_postclip	100		# Ignore last drift_postclip points of spectrum, None = no clipping
drift_range		11		# Trim spectra by +/-X pixels to compute valid region of cross correlation
drift_hw		5		# Half-width in pixels used when fitting Gaussian, must be smaller than drift_range
drift_iref		-1		# Index of reference spectrum used for cross correlation, -1 = last spectrum
sub_mean		True	# Set True to subtract spectrum mean during cross correlation
sub_continuum	True	# Set True to subtract the continuum from the spectra using a highpass filter
highpassWidth	10		# The integer width of the highpass filter when subtracting the continuum

# Parameters for sigma clipping
clip_unbinned	False	# Whether or not sigma clipping should be performed on the 1D time series
clip_binned		True	# Whether or not sigma clipping should be performed on the 1D time series
sigma			4		# The number of sigmas a point must be from the rolling median to be considered an outlier
box_width		20		# The width of the box-car filter (used to calculated the rolling median) in units of number of data points
maxiters		20		# The number of iterations of sigma clipping that should be performed.
boundary		'fill'	# Use 'fill' to extend the boundary values by the median of all data points (recommended), 'wrap' to use a periodic boundary, or 'extend' to use the first/last data points
fill_value		'mask'	# Either the string 'mask' to mask the outlier values (recommended), 'boxcar' to replace data with the mean from the box-car filter, or a constant float-type fill value.

# Limb-darkening parameters needed to compute exotic-ld
compute_ld		False

# Diagnostics
isplots_S4		3		# Generate few (1), some (3), or many (5) figures (Options: 1 - 5)
vmin			0.98
vmax			1.01
time_axis		'y'
hide_plots		True	# If True, plots will automatically be closed rather than popping up
verbose			True	# If True, more details will be printed about steps

# Project directory
topdir			/Volumes/DataDrive/WASP43b_Phasecurve

# Directories relative to project dir
inputdir		Stage3
outputdir		Stage4_white